Enrichment

    Enrichment Treemap

    Results table

    The table of results and tree map figure are colour coded to indicate statistical significance. Red means highly significant and white means less significant. We have the following columns in the Enrichment results.
    mt: The number of genes in the entire population annotated to this term
    nt: The number of genes in the test set annotated to this term
    mpat (Only “go” and “hierarchical”): The number of genes annotated to this term or parents of it in the entire population
    npat (Only “go” and “hierarchical”): The number of genes annotated to this term or parents of it in the test set
    pval: The naive p-value
    padj: The p-value adjusted for multiple testing correction (pval -> padj) is Benjamini-Hochberg

    * test statistics is the Parent-Child test (https://doi.org/10.1093/bioinformatics/btn250)

    For more details https://github.com/bschiffthaler/gofer2

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