The table of results and tree map figure are colour coded to indicate statistical significance. Red means highly significant and white means less significant. We have the following columns in the Enrichment results.
mt: The number of genes in the entire population annotated to this term
nt: The number of genes in the test set annotated to this term
mpat (Only “go” and “hierarchical”): The number of genes annotated to this term or parents of it in the entire population
npat (Only “go” and “hierarchical”): The number of genes annotated to this term or parents of it in the test set
pval: The naive p-value
padj: The p-value adjusted for multiple testing correction (pval -> padj) is Benjamini-Hochberg
* test statistics is the Parent-Child test (https://doi.org/10.1093/bioinformatics/btn250)
For more details https://github.com/bschiffthaler/gofer2
We are sorry that this post was not useful for you!
Let us improve this post!
Tell us how we can improve this post?